Taipan U type fibres now recognised and interpolation of missing fibers is now based on archive positionsing

Removed a temporary process utilised for old taipan data that is no longer needed and catalina does not like

The GNUmakefile.am was trying to use .mid files in distribution,
which has now been removed.
Also, the create_drexec_modified script was using .mid file for
trying to determine which files were modified: This has been replaced
by scanning output of git status

mnb authored 6 years ago and afarrell committed 4 years ago

	Added Bruce Murray's new multi psf code for SAMI reduction.

	Additional files:

		bckgrd_1dfit_external.F95
		C2G2L_psf_module.F95
		multipsffit.F95

	Updated previously added external psf files
		external_psf.F95
		external_psf_module.F95

	Adjustments to:
		make_ex.F95
		make_res.F95
 		tlmfit_corrector.F95
		extract_optimal.F95
		make_tlm_other.F95
		make_tlm.F95

mnb authored 6 years ago and afarrell committed 4 years ago

	Added some testing code for LA Enclose for safe keeping

mnb authored 6 years ago and afarrell committed 4 years ago

	Added "PROPAGATE_BADVALS_TO_EXTRACTED" subroutine that will
	propogate bad values from image to extraction to the same rules
	as extract_gauss. Applied after optimal extraction as requested
	by Scott Croom.

	In Scott Croom's variant of Optimal Extraction, ensured that bad values
	are handled correctly when scattered light model is subtracted from
	image data for the second pass.

mnb authored 6 years ago and afarrell committed 4 years ago

	Added aaorun command "SKYSUB_PCA"

mnb authored 6 years ago and afarrell committed 4 years ago

	Basic cleanup.

mnb authored 6 years ago and afarrell committed 4 years ago

	Updates to invoking the CosmicContour algorithms via the aaorun
	command:
		reduce_gen [filename] -type CR_IDENT

mnb authored 6 years ago and afarrell committed 4 years ago

	Fixed accidental syntax bug checked in previously

mnb authored 6 years ago and afarrell committed 4 years ago

	Added CosmicContour.f90 to the build process.
	Added generic_CR_IDENT.F95 which adds the experimental LA cosmic
	comntour enclosure analysis work to be called via aaorun reduce_gen

mnb authored 6 years ago and afarrell committed 4 years ago

	Added Addendum to the comments for the 3.706 release.
	Updated CosmicContour.f90 for safekeeping.

mnb authored 6 years ago and afarrell committed 4 years ago

	Removed accidental redfines of bad values in cosmic_ray.F95 and
	hope that this fixes the current spate of regression failures. Add

        ---------
	ADDENDUM:
	---------
	Also includes file:  external_psf.F95 and the architecture
	for the usage of a 3rd party definition of psf function (eg other
	than Gauss and Voigt) to be defined within the external_psf fortan
	file and utilised during optimal extraction when the psf function
	in the ARGS variable is set to "EXTERNAL". Note, this was implemented
	as an ease of use for Bruce Murray in his work on multi parameter

	profile functions.

mnb authored 6 years ago and afarrell committed 4 years ago

	Added CosmicContour.f90 for safekeeping

mnb authored 6 years ago and afarrell committed 4 years ago

	Ensured that the TAIPAN experimental work is not invoked on standard
	reductions.

mnb authored 6 years ago and afarrell committed 4 years ago

	Checking in the current experimental work on sky recalibration
	for TAIPAN data which is showing signs of working.

mnb authored 6 years ago and afarrell committed 4 years ago

	Determined that the problem with reducing the KOALA flat field
	16jan20015.fits is because it is too saturated > 10%. Thus have added
	warning if saturation exceeds 1% that this may cause problems with
	fibre tracing and arc line tracing.

mnb authored 6 years ago and afarrell committed 4 years ago

Checking in the first apparent working version of the VT DIRECT cubic perturbation search for wavelength re-calibration
	Checking in the first (apparently) working version of the VT DIRECT
	cubic perturbation search to calibration_spectra.F95 for the TAIPAN
	skyline recalibration.

mnb authored 6 years ago and afarrell committed 4 years ago

	In : calibrate_spectra.F95
	Added an option to search for optimal cubic perturbations via
	the VT DIRECT optimiser. This required a new module placed in
	file: CALIBRATION_VTDIRECT_MOD.F95

mnb authored 6 years ago and afarrell committed 4 years ago

	Checking in current WIP of  TAIPAN skyline re-calibration code for
	safe keeping. Actual testing routines should have been switched off
	by test/debug/verbose logical flags set to false so as not to break
	any regression tests.

mnb authored 6 years ago and afarrell committed 4 years ago

	Adding the base routines for perturbation search of wavelength
	calibrations (in calibrate_spectra.F95) to be used in TAIPAN skyline
	re-calibration.

mnb authored 6 years ago and afarrell committed 4 years ago

	Checked in methods for decompressing fits files that have been
	compressed by fitsio code.

mnb authored 6 years ago and afarrell committed 4 years ago

	Checked in more refactoring of the reduction generics

mnb authored 6 years ago and afarrell committed 4 years ago

	Checked in more refactoring of the reduction generics

mnb authored 6 years ago and afarrell committed 4 years ago

	Checked in more refactoring of the reduction generics

mnb authored 6 years ago and afarrell committed 4 years ago

	Checked in refactoring of the reduction generics

mnb authored 6 years ago and afarrell committed 4 years ago

	Checking in refactoring. Included new file string_utils.F95 for handy
	string manipulations.