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aaoCopy modes and add .gitignore.

Tony Farrell requested to merge aaocopy_revamp into master

try to avoid touching existing repos. Also check that if the directory exists, it is a git repo. Ensure all git commands are logged. Add -usessh command, which triggers using ssh approach to access the archive. If arg1 is not a url, only prefix with rds/ if it does not already start with that. If arg1 is not a url, only append. git if it does not already have file type.

Add .gitignore.

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